FastQCFastQC Report
Sun 21 May 2023
EGAF00007942890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403055
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54611.3549019364602846No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15220.37761595811985954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8400.2084082817481485No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8140.20195754921784867No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7550.18731934847601445No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6570.16300504893873044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6550.162508838744092No Hit
ACTCTGGCTACCCCAGCCGTGCGTCGTCTGG5030.12479686395156987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)