FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450672
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15330.3401586963467888No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13120.2911208151382824No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12330.2735914367877303No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10870.24119537046898856No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10780.23919835268221679No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9290.2061366137678844No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8060.17884403734867044No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7690.17063407533638655No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7200.15976142294174034No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6980.15487982390740937No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6880.15266091525544076No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6800.15088578833386587No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6700.14866687968189726No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6230.13823800901764477No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6080.13490964603969186No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6060.1344658643092981No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5990.13291262825292008No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5860.13002804700536089No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5820.12914048354457344No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5640.12514644797102994No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5610.12448077537543935No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5410.1200429580715021No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5370.11915539461071467No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5250.11649270422835233No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG5150.11427379557638372No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4970.11027976000284019No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG4840.107395178755281No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4760.10562005183370612No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4690.10406681577732808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)