FastQCFastQC Report
Wed 31 May 2023
EGAF00007942892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450672
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63311.4047910675613307No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17270.38320552419497994No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15630.34681542230269463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14230.31575070117513404No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13120.2911208151382824No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12920.28668299783434514No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12530.2780292540916675No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10100.22410977384883018No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9250.20524905030709695No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8250.1830599637874108No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7650.1697465118755991No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.15909575034614976No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7060.15665495082898426No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6790.150663897468669No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6480.1437852806475663No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.1384598998828416No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6140.136240991230873No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6000.13313451911811694No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5980.13269073738772322No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5920.13135939219654205No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5850.129806156140164No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5820.12914048354457344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5650.12536833883622678No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5320.11804594028473035No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA5250.11649270422835233No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.11649270422835233No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4990.11072354173323393No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4980.11050165086803707No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC4890.10850463308126532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4890.10850463308126532No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4880.10828274221606844No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4670.10362303404693436No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4570.10140412539496574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)