FastQCFastQC Report
Wed 31 May 2023
EGAF00007942894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472107
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45410.9618582228181324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19960.4227855126062524No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15030.318360032789177No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14760.31264099028398223No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12810.2713367944131309No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11440.24231794910899435No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11440.24231794910899435No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10640.22537263798249127No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9720.2058855301870127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8730.1849157076679651No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.1808911962754206No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8150.17263035710125035No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7450.15780320986556012No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7190.15229598374944664No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6040.12793709900509842No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5860.12412440400163523No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.11755809594011528No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5120.10844999120961986No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4860.10294276509350635No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT4860.10294276509350635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)