FastQCFastQC Report
Sun 21 May 2023
EGAF00007942896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500459
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43180.8628079423089604No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG18540.3704599177954638No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13010.25996135547567334No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12070.24117859804699285No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11170.22319510689187325No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.22259565718670263No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9080.18143344409831774No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8680.17344078136270902No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8560.1710429825420264No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7380.14746462747198072No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7140.1426690298306155No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6450.12888168661169047No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5990.11969012446574046No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5720.11429507711920457No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5560.1110980120249611No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5190.10370479899452303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)