FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494239
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18400.37228951984768505No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13990.2830614338407127No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13000.2630306390228209No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12680.2565560386776438No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9330.1887750663140707No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8270.1673279526706715No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7500.15174844559008902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6640.13434795716242548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5780.11694746873476193No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5560.11249618099745265No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5000.10116563039339267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)