FastQCFastQC Report
Sun 21 May 2023
EGAF00007942900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555830
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62201.1190471906878001No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA50310.9051328643650037No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23090.41541478509616253No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20430.36755842613748807No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16530.29739308781461954No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14370.25853228505118475No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14310.25745281830775596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13940.2507961067232787No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13670.24593850637784934No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC12460.2241692603853696No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12420.22344961588975049No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11660.20977637047298633No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11320.20365939226022345No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11100.19970134753431804No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10920.19646294730403183No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10130.18224996851555333No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9850.17721245704621919No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9430.16965618984221795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9400.16911645647050358No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9010.16209992263821674No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8710.156702588921073No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8660.15580303330154904No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8580.1543637443103107No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8170.1469873882302143No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8090.14554809923897594No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8040.14464854361945198No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8010.1441088102477376No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7850.14123023226526096No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7710.1387114765305939No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7010.12611769785725852No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6820.1226993865030675No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6260.1126243635643992No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6230.1120846301926848No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6140.1104654300775417No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6090.10956587445801774No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6060.10902614108630336No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5910.1063274742277315No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5820.10470827411258837No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5600.10075022938668297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)