FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544499
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17950.3296608441888782No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13400.2460977889766556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10330.1897156835917054No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8030.14747501831959287No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6030.11074400503949502No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5750.10560166318028133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)