FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492010
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17750.36076502510111585No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6400.1300786569378671No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6400.1300786569378671No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5880.1195097660616654No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5380.10934737098839455No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5330.10833113148106745No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5240.10650190036787871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)