FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492010
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47200.95933009491677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17790.3615780167069775No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14620.29714843194244017No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6590.13394036706571005No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5920.12032275766752708No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5460.11097335420011789No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5240.10650190036787871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)