FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499233
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17570.3519398757694303No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6960.13941386086256316No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6540.13100095546568435No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6120.12258805006880553No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5770.11557729557140654No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5400.10816592653129901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)