FastQCFastQC Report
Sun 21 May 2023
EGAF00007942912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511173
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51421.0059216742668333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18920.37012909523781573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11040.2159738483840109No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9920.19406345796824168No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9040.17684815121299444No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8060.15767655959919635No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6880.13459239826829664No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC6800.13302737038145598No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5820.11385577876765793No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5690.11131260845154184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)