FastQCFastQC Report
Sun 21 May 2023
EGAF00007942914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535331
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26490.494834037259191No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13650.254982431430274No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12030.22472078022756017No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9480.1770866996306958No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8690.16232947466147113No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8610.16083507213294204No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7970.14887985190470943No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7700.1438362433709238No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT7530.1406606379977995No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA6870.1283318171374346No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6520.12179380607511987No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6450.12048620386265693No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.11693699785740037No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6240.11656339722526811No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6120.11432179343247449No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5790.10815738300229204No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5770.10778378237015977No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5660.10572897889343229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)