FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491147
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14300.29115519386252997No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11980.24391882674637122No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9210.18752023324992315No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9010.18344813263646118No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8660.17632195656290275No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8280.16858496539732504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8090.1647164698145362No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4990.10159891030587583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)