FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507287
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55711.0981949074192716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17930.3534488366545959No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14790.29155093664927345No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13160.2594192242261284No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12320.24286055033935425No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12070.23793237358733813No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11920.23497546753612847No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11450.22571049524233816No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9840.19397303695935436No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9590.18904486020733827No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9140.18017414205370924No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9030.17800574428282215No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7480.14745104842032222No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7430.146465413069919No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6430.12675270606185454No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5470.10782850733411263No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5400.10644861784354813No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5160.10171756816161265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)