FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470064
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45630.9707188808332483No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26460.5629020729092209No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18030.3835647911773716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7790.16572211443548113No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7390.15721263487525103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6700.1425337826338541No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6350.13508798801865277No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6020.12806766738146294No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6010.1278549303924572No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5990.1274294564144457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5290.11253786718404303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5010.10658123149188195No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4730.1006245957997209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)