FastQCFastQC Report
Sun 21 May 2023
EGAF00007942925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384086
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6230.1622032565623324No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4150.10804871825580731No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4120.10726764318407857No Hit
ACGCGCGCGGATAAATTTACGAACGCCTTCGGCAGAATCAGTGG3870.10075868425300583No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT3860.10049832589576294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)