FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384086
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38951.014095801461131No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7340.19110303421629532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6100.15881859791817457No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5540.14423852991257166No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA3920.10206047603922039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)