FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426077
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18520.4346632181507099No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18050.4236323481436454No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14810.34758975490345645No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11360.2666184750643663No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10930.2565264025047116No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10730.25183241526766287No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10050.2358728586616973No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9910.23258706759576322No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9840.23094417206279616No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9650.22648488418759988No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9400.22061740014128903No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8770.2058313403445856No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7560.17743271756044096No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7100.16663654691522894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.16593244882967165No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7040.16522835074411432No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7030.16499365138226188No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6980.16382015457299973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6880.16147316095447536No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.15349338265149257No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5710.13401333561774045No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5700.133778636255888No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5280.12392126305808575No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4960.11641088347880782No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4820.11312509241287375No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4470.1049106147480385No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4440.10420651666248121No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4390.10303301985321901No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4380.10279832049136658No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4350.10209422240580927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)