FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429661
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44541.0366312046008364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12530.2916252580522784No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12010.27952269347229564No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10090.2348363011769744No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9370.21807890406622898No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8670.20178699020855978No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8500.19783038255741153No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7380.17176332038514086No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.14267061706787443No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5440.1266114448367434No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5140.11962919604059945No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4720.10985404772599794No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4640.1079921147136929No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4600.10706114820754037No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4430.10310454055639214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)