FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387078
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37250.9623383400761604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11870.30665653950883287No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8070.2084851115279091No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7600.1963428559618475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6900.1782586455443089No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5290.13666496158397018No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5130.13253142777424703No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5060.1307230067324932No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4830.12478105188101624No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4370.1128971421780623No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4280.11057202941009306No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4230.10928030009455458No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4010.10359669110618533No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4000.10333834524307761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)