FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398153
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19430.4880033554939935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18300.4596223059979455No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14500.3641816085776071No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9600.24111334085138125No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9540.23960638247106014No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9230.23182043083940096No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9180.2305646321891333No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9100.22855535434870514No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8990.2257925973181164No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8240.20695561756410222No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7350.18460240158933877No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7170.18008152644837538No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7130.17907688752816128No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7120.17882572779810776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.17756992914784014No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6900.17330021373693028No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6480.16275150507468233No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6360.15973758831404006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6210.15597019236323725No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5940.14918887965179214No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5810.14592380316109638No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5790.1454214837009893No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5630.14140292802013296No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5440.13663089314911603No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5360.13462161530868785No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5200.1306030596278315No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5150.1293472609775639No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4990.12532870529670753No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4680.11754275366504835No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4620.11603579528472724No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4500.11302187852408496No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4210.10573824635253283No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4170.10473360743231874No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4160.1044824477022652No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4130.10372896851210466No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4050.10171969067167648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)