FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377652
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39341.0416997659220657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18860.49940156546238335No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17210.4557105483355047No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13630.36091428087233746No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9650.25552625168144216No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9230.24440490186732758No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8520.22560452480061008No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8130.2152775571160751No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7830.20733373582027897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7830.20733373582027897No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6700.1774120089394469No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6690.1771472148962537No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6680.1768824208530605No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6560.17370489233474204No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6380.16893859955726437No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6140.16258354252062746No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6070.160729984218275No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5890.15596369144079736No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5670.15013822249054684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5570.1474902820586148No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5450.14431275354029635No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5360.1419296071515575No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5310.1406056369355915No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5130.13583934415811383No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4960.13133784542382934No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4840.12816031690551088No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4820.1276307288191245No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4570.12101087773929438No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4400.1165093790050099No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4100.10856555770921378No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4090.10830076366602057No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3930.1040640589749293No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA3920.1037992649317361No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG3820.10115132449980405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)