FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455190
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18620.4090599529866649No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15050.33063116500801865No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12660.27812561787385487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11560.25395988488323556No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10960.24077857597926142No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10710.23528636393593885No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10630.23352885608207563No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8780.1928864869614886No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8650.1900305366989609No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8190.17992486653924736No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7940.17443265449592477No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7670.1685010654891364No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7240.1590544607746216No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.15531975658516223No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6720.14763065972451064No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6560.1441156440167842No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6480.14235813616292098No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6390.14038093982732486No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6070.13335090841187197No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5920.13005558118587843No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5790.12719963092335068No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5770.12676025395988488No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5690.12500274610602166No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5610.12324523825215845No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5520.1212680419165623No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5240.11511676442804103No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4780.10501109426832751No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4660.10237483248753268No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4640.10193545552406687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)