FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408432
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41051.0050632663454382No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22640.5543150389783367No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11440.280095585066792No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9810.24018686097073685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9670.23675911779684256No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7890.19317781172875778No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7170.17554941826301562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6990.1711423198965801No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6900.16893877071336233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6460.1581658635954088No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5650.13833392094644886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5550.13588553296509578No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5550.13588553296509578No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4970.12168488267324794No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4210.10307713401496454No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4200.10283229521682925No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4110.10062874603361148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)