FastQCFastQC Report
Sun 21 May 2023
EGAF00007942950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425385
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32620.766834749697333No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22180.521410016808303No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17280.4062202475404633No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16070.37777542696616007No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12580.29573210150804563No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12030.28280263761063507No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12030.28280263761063507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11500.2703433360367667No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG10150.23860737919766797No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9760.229439213888595No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9470.22262186019723307No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9190.21603958766764228No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9020.21204320791753353No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7360.1730197350635307No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6940.1631463262691444No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6930.16291124510737331No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6550.15397816096007147No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6470.15209751166590266No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6290.14786605075402282No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6250.14692572610693844No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6210.145985401459854No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5590.13141036943004572No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5160.12130187947388836No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5140.12083171715034616No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5130.12059663598857505No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5060.11895106785617733No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5020.11801074320909294No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4490.10555144163522456No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4340.10202522420865803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4310.10131998072334474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)