FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393476
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39050.9924366416249022No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11160.28362593906616923No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9250.2350842236883571No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6210.15782411125456192No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6060.15401193465421015No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5350.13596763207921195No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4640.11792332950421372No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4230.10750338012991897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)