FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390246
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21210.5435033286696084No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12290.31492955725362975No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10490.26880480517417216No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9640.24702367224776167No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9170.23497998698256997No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9080.2326737493785971No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA8030.2057676439989135No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6920.177324046883248No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6830.17501780927927513No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6580.16861159371268378No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6510.16681785335403823No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5860.15016169288090075No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5630.14426797455963675No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.14221798557832752No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5300.1358117700117362No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5270.13504302414374522No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5250.13453052689841793No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5160.13222428929444502No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4800.12299933887855352No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4740.12146184714257162No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4530.11608062606663488No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4380.11223689672668008No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4340.11121190223602549No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4180.10711192427340704No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4160.10659942702807973No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4130.10583068116008876No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4080.1045494380467705No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA3950.10121820595214301No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3940.10096195732947937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)