FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390246
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37830.9693885395366No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21190.5429908314242812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21080.5401720965749809No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12550.3215920214428848No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10580.2711110427781451No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10410.266754816192863No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10310.26419232996622644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9420.2413862025491613No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9040.23164875488794248No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8380.21473634579214138No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7920.20294890914961333No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7550.19346771011105815No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7370.1888552349031124No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6690.17143032856198398No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6490.16630535610871092No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5810.1488804497675825No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5700.14606171491828232No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.13914300210636368No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5350.13709301312505445No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4860.12453683061453545No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4330.11095565361336182No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC4280.10967441050004356No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4230.1083931673867253No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4200.10762442151873433No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4170.10685567565074337No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4070.10429318942410686No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4070.10429318942410686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)