FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389527
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16930.43462969190839146No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11730.3011344528107166No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9670.24824980039894537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9660.247993078785296No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9600.24645274910339976No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7780.19972941541921357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7710.19793236412366794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7610.1953651479871742No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5810.14915525753028674No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5220.13400868232497362No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5120.13144146618847988No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4250.10910668580098427No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4030.10345881030069802No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG3960.1016617590051524No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3930.10089159416420428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)