FastQCFastQC Report
Wed 31 May 2023
EGAF00007942963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447261
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26220.5862348829877856No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20720.4632641790811182No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19470.43531629182960285No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15720.3514726300750568No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12740.2848448668674443No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12350.27612512604497147No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9860.22045293463995294No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8350.18669188684012245No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7990.17864289531168603No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7380.16500432633294654No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6290.14063376864962518No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4870.10888496873190374No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4780.10687272084979463No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4530.10128314339949158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)