FastQCFastQC Report
Wed 31 May 2023
EGAF00007942964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447261
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA52521.1742584307596682No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27380.6121705223571918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24810.5547096661680764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16180.36175745258361447No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10620.2374452500888743No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9970.2229123487180863No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8550.19116354880036487No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8510.1902692164083164No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8430.18848055162421942No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6950.15539025311842528No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6500.14532901370787973No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5880.13146686163112814No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4820.10776705324184313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4760.10642555465377038No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4660.10418972367364918No Hit
CTGGACGCACTGGGCAACGATCGCATCGCGT4510.10083597720346733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)