FastQCFastQC Report
Sun 21 May 2023
EGAF00007942965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432884
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24470.5652784579702645No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18980.4384546437382763No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18390.42482512636179665No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14750.34073793441199024No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12220.28229271583149296No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12010.2774415316805426No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9560.22084438325278827No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8210.18965819942525017No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7420.17140850666691307No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7130.1647092523632197No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5760.13306105099749585No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4950.11434934070097301No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4440.10256789347723641No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4440.10256789347723641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)