FastQCFastQC Report
Wed 31 May 2023
EGAF00007942966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432884
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48621.123164635329557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39760.91849086591327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26460.6112492030197467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23530.5435636336755343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14650.3384278467210615No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9980.230546751554689No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8410.1942783748071077No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8200.18942719065615732No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8010.1850380240433927No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6540.1510797349867401No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5880.13583315622661035No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5280.12197263008103787No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4520.10441596362997939No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4470.10326091978451503No Hit
CTGGACGCACTGGGCAACGATCGCATCGCGT4440.10256789347723641No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4380.10118184086267915No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4330.10002679701721477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)