FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446677
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19320.43252730720408705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19110.4278259234301296No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17820.39894599453296226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12510.28006814767718063No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12240.27402351139637815No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10970.24559133333482583No Hit
CAGAGACAGGGTGGAATCGGCGTAAATTGCGTCACGCTGTTTGC10920.24447195624578832No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8000.17910033424599878No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7790.17439895047204132No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7630.17081694378712134No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6970.15604116621182643No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6140.13745950653380407No Hit
CGGGTGCAGAGTCTGAGCGAAACCGCTGTTCAGGGACTGGGTGA5710.12783286356808163No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5680.12716123731465914No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5410.12111660103385669No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5390.12066885019824168No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5160.11551971558866922No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5060.11328096141059424No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5050.11305708599278674No Hit
CGCCTGCACGGAAGCCAGGTCACGGCCGAAATCGTCGCTCGCCA4900.10969895472567426No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4780.10701244971198427No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4660.1043259446982943No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4660.1043259446982943No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4660.1043259446982943No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4630.1036543184448718No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4610.1032065676092568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)