FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420914
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14960.35541702105418205No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14450.34330053170006225No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14240.33831138902483643No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12620.2998237169588087No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12520.2974479347325107No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10850.25777237155333393No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10190.24209220885976707No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9270.22023501237782542No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7370.17509515007816323No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7270.17271936785186523No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7180.17058116384819702No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7090.1684429598445288No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6680.158702252716707No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6630.15751436160355797No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6560.15585131404514938No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5800.1377953691252845No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5740.1363698997895057No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5540.1316183353369097No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5480.1301928660011309No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5290.12567887977116465No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5270.12520372332590507No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4990.11855153309227064No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4850.11522543797545341No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4760.11308723397178522No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4700.11166176463600641No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4660.11071145174548722No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4230.10049558817240575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)