FastQCFastQC Report
Sun 21 May 2023
EGAF00007942970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420914
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40860.9707446176653663No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31470.7476586666159833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20130.4782449621537892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15420.3663456192951529No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12940.30742622008296233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11610.2758283164731988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10840.25753479333070417No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10650.25302080710073793No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8250.1960020336695857No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7640.18150976208916786No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7580.18008429275338905No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7470.17747093230446126No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7090.1684429598445288No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6850.1627410825014136No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6590.15656404871303878No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6450.15323795359622155No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6400.15205006248307254No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6100.1449227158041785No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5600.1330438046726885No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5570.13233107000479907No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5480.1301928660011309No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5280.12544130154853483No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5190.12330309754486665No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5100.12116489354119844No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5050.11997700242804944No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG4960.11783879842438122No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4820.11451270330756402No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4710.11189934285863622No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC4500.10691020018341038No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4220.10025800994977598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)