FastQCFastQC Report
Wed 31 May 2023
EGAF00007943038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534765
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30500.5703439828709806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24820.4641291034379587No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23690.44299832636765685No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16080.30069282769066785No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15870.2967658691200808No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13420.2509513524632315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13280.24833338008284014No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12310.23019457144727123No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10690.19990089104559944No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9210.1722251830243191No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8660.16194029152992437No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8580.16044430731255785No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8410.15726534085065402No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7690.14380148289435546No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7560.1413705085411349No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7540.14099651248679326No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7390.13819154207923107No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7090.13258160126410667No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6400.11967873738932054No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6320.11818275317195405No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5800.10845885575907173No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5620.1050928912699971No Hit

[OK]Adapter Content

Adapter graph