FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494076
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46420.939531570041856No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10400.21049393210761097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8280.16758555363952105No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7110.1439049862774148No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6510.1317611055788988No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5760.11658125470575377No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5460.11050931435649576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)