FastQCFastQC Report
Wed 31 May 2023
EGAF00007943042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514500
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT80181.5584062196307096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22700.44120505344995137No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA12380.2406219630709427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9700.18853255587949466No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG9560.1858114674441205No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8430.16384839650145772No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8130.15801749271137025No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7910.15374149659863945No Hit
TATGTTATGGACCAGGAACTGGCGGATCTGC7650.14868804664723032No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7510.14596695821185618No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6890.13391642371234208No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA6810.13236151603498542No Hit
GAAGAGGTAGCCATTGCTCGCGCAACCGAAG6500.1263362487852284No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6390.12419825072886297No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6250.12147716229348883No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6190.12031098153547135No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6160.11972789115646258No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6040.11739552964042761No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6010.11681243926141885No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5370.1043731778425656No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.10359572400388728No Hit

[OK]Adapter Content

Adapter graph