FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520807
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT77721.4922994506602254No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23280.44699860024922866No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA12310.23636395056134038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10370.199114067207238No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG10030.19258573713486954No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8820.16935256246555827No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8300.15936805764899473No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7830.1503436013724854No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7710.14803948487635535No Hit
TATGTTATGGACCAGGAACTGGCGGATCTGC7590.1457353683802253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7220.13863100918382434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7160.13747895093575932No Hit
GAAGAGGTAGCCATTGCTCGCGCAACCGAAG6760.12979856261532582No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6570.12615037816311991No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA6520.12519032962306573No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6210.11923802867472981No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6100.11712592188661058No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6060.11635788305456723No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5530.10618136852999288No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5510.1057973491139712No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5280.10138112582972195No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5210.10003705787364608No Hit

[OK]Adapter Content

Adapter graph