FastQCFastQC Report
Sun 21 May 2023
EGAF00007943045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494511
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33810.6837057214096349No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31850.6440706071250185No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21740.4396262166058995No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA12140.24549504459961458No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8960.18118909387253268No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT8050.16278707652610355No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7610.15388939780914884No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7530.1522716380424298No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7320.1480250186547923No Hit
CGGCAGGTGACGACGCAGGGCGTTCGCCAGAGCAGCACCACCCT6890.13932955990867746No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6620.1338696206960007No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA6460.1306341011625626No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6120.12375862215400668No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6060.1225453023289674No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5960.1205231026205686No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5730.11587204329125136No Hit
GTCCGGGTTACGCTTACGGATCTCAGAGCCAGTAACCAGACCCA5710.11546760334957161No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5510.111423203932774No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5300.10717658454513651No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5110.1033344050991788No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4980.10070554547826034No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4960.10030110553658057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)