FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494511
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT77071.5585093152629568No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41210.8333484998311463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22120.447310575497815No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA12160.24589948454129432No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG8800.1779535743390946No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7950.16076487681770477No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7860.15894489708014584No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7710.15591159751754763No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7410.14984499839235124No Hit
TATGTTATGGACCAGGAACTGGCGGATCTGC6890.13932955990867746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6670.1348807205502001No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6640.13427406063768044No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA6510.131645201016762No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6350.12840968148332393No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6050.12234308235812752No Hit
GAAGAGGTAGCCATTGCTCGCGCAACCGAAG5970.12072532259140849No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.11748980305797041No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5750.1162764832329311No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5250.10616548469093712No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5140.10394106501169843No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5040.10191886530329962No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5020.10151442536161988No Hit

[OK]Adapter Content

Adapter graph