FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492535
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT33800.6862456475174353No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG22860.46412945272924766No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21430.435095983026587No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19440.39469276295085626No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT18290.37134416843473056No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG16000.324850010659141No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG15930.3234287918625072No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA14800.3004862598597054No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13840.28099525922015695No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13350.27104672764372073No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12300.24972844569421462No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11320.22983138254134222No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG11100.22536469489477903No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA9370.19024028749225944No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9190.1865857248723441No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9040.18354025602241464No Hit
TTCCGCTTTCGGTTTACGCGGGGCGCGTTTGCGTGGAGTTTTTG8770.17805841209254164No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8770.17805841209254164No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8420.17095231810937292No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7790.15816134893966927No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7720.15674013014303553No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC7290.1480097861065711No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC7070.1435430984600079No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6560.1331885043702478No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6320.12831575421036068No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6300.12790969169703675No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6290.1277066604403748No Hit
CACGCTAGATACCATCTGGCAGAACATGGAGATGTCCTGGCCAT5970.12120966022719198No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5940.12060056645720608No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5930.12039753520054412No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5860.11897631640391039No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5850.11877328514724843No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG5760.11694600383729074No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5700.11572781629731897No Hit
AACGCCGCGCAGGTCTGCTTCACCACCTTCGCCTTCGTCCTGGT5690.11552478504065701No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5440.11044900362410792No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5300.10760656603084046No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5270.10699747226085454No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5260.1067944410041926No Hit
CATGATGGTCTGCCACTGCTGGTTTTGCAGGTCTGCAGCGTATT5180.1051701909508969No Hit
ACGCGGGCGTTCCGGGGTTGCGCCAACCAGACGGGAGCAGTCCG5090.10334290964093922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)