FastQCFastQC Report
Wed 31 May 2023
EGAF00007943050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503256
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC63791.2675457421272673No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG53341.0598979445848633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46310.9202076080563372No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA34120.6779849619279253No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT31120.6183731540210151No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG28620.5686966474319233No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG28550.5673057052474287No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC27670.5498195749280684No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA23650.46993975233280877No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG22800.45304974009251753No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19750.3924444020538255No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG19210.38171427663058166No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC16330.32448694103994785No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC15380.30560986853609295No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15190.30183445403532194No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT14570.2895146804012272No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14220.2825599694787544No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13140.26109971863226666No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10070.20009696854086192No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC9590.19055907927575627No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT9210.1830082502742143No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG8210.16313764763857758No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8140.161746705454083No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7800.15499070055796654No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7520.14942693181998823No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7520.14942693181998823No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7310.1452541052665045No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7230.1436644570556536No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7120.14147869076573355No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6830.13571621600139888No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6420.12756926892078782No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6350.12617832673629326No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6300.12518479660451143No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6180.12280032428823502No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6140.12200550018280955No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6090.1210119700510277No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5800.11524949528669305No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5410.10749996025879473No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5350.10630772410065653No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5100.10134007344174735No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5060.10054524933632188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)