FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488852
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28800.5891353620318623No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26760.5474049405546055No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16880.34529878163534156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15890.3250472535654963No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14090.2882262934385049No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13990.28618068454256096No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13190.2698158133750092No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12330.25222357686989105No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11910.24363201950692642No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11870.24281377594854883No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11480.2348359012543674No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10620.21724366474924925No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9910.20271984158804712No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9690.19821950201697036No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9650.19740125845859277No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9410.19249179710832726No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9350.19126443177076088No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9060.1853321659725234No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8660.1771497303887475No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8130.16630800324024447No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7850.1605802983316014No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7690.15730732409809103No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7500.1534206671957975No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7450.15239786274782552No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6880.14073789204094492No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6660.13623755246986818No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6630.13562386980108498No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6340.1296916040028475No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6150.12580494710055395No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5840.11946355952312765No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5700.11659970706880611No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5630.11516778084164532No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5470.11189480660813499No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5360.1096446368225966No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5350.10944007593300221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)