FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453090
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19840.4378820984793308No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18080.39903771877551925No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13880.3063409035732415No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13550.29905758237877683No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA8950.1975324990619965No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8820.19466331192478314No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7460.16464720033547417No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6750.148977024432232No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5210.11498819219139685No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5190.11454677878567172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)