FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453090
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41690.9201262442340374No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19600.4325851376106292No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19080.42110838906177583No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13410.2959676885387009No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13040.28780154053278595No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8870.19576684543909598No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG8770.19355977841047034No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8070.1781103092100907No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7790.17193052152993887No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7730.17060628131276345No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7000.15449469200379615No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5530.12205080668299896No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5110.1127811251627712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)