FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486194
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21140.43480585938946187No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19370.3984006384282817No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16110.33134921451107996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14910.30666770877468663No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA9180.1888135188834087No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8940.18387721773613003No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7730.1589900327852668No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7300.1501458265630592No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6300.12957790511606476No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5910.12155641575173695No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5120.10530775780861139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)