FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486194
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20880.4294581998132433No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20530.4222594273067952No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15810.3251788380769816No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15150.3116040099219653No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG9500.1953952537464469No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9360.19251574474386768No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9260.19045895259916823No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8530.1754443699428623No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8490.17462165308498254No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8450.17379893622710274No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7490.15405373163798813No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6290.12937222590159483No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5890.12114505732279707No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5030.10345664487838187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)